Abstract
BACKGROUND AND AIMS: Primary hypobetalipoproteinemia (HBL) is mostly due to a polygenic origin or to monogenic disorders including loss of function (LOF) variants in APOB, much less frequently Angiopoietin-like 3 gene (ANGPTL3). A new heterozygous variant of uncertain significance (VUS), p.H343R missense variant in ANGPTL3 cosegregated with HBL in a family. The aim of the present study was to assess in vitro the functionality of this variant and to establish its causality in this family.</p>
METHODS: Targeted next-generation sequencing was performed in the proband to assess monogenic and polygenic origins using an LDL-C-dedicated polygenic risk score (PRSLDL-C). The effect of the variant was investigated by assessing the ANGPTL3 protein secretion in vitro. A replication study was performed in the UK-biobank.</p>
RESULTS: All 8 HBL subjects had PRSLDL-C below the first decile, supporting a polygenic HBL. Six family members also carrying the p.H343R variant (n = 6) had a significantly lower LDL-C than the polygenic members non-carriers of the p.H343R (n = 2) (p=0.012). In vitro, p.H343R variant significantly decreased ANGPTL3 concentration in the medium (-82 %, p=0.029) and the ratio of secretion (0.28 ± 0.06 vs. 1.00 ± 0.30 p=0.029, n = 3) compared to the wild-type. The synergistic combination of the p.H343R ANGPTL3 variant and a polygenic HBL predisposition was confirmed in the UK biobank.</p>
CONCLUSIONS: This study shows that the novel ANGPTL3-p.H343R variant decreases ANGPTL3 secretion in vitro and can now be considered as a LOF variant. The lipid phenotype in this family results from a synergistic combination of the p.H343R ANGPTL3 variant and a polygenic HBL predisposition.</p>